Workflows

What is a Workflow?
170 Workflows visible to you, out of a total of 170

The MAPseq to Ampvis workflow processes MAPseq OTU tables and associated metadata for analysis in Ampvis2. This workflow involves reformatting MAPseq output datasets to produce structured output files suitable for Ampvis2.

Type: Galaxy

Creators: Rand Zoabi, Mara Besemer

Submitter: WorkflowHub Bot

MGnify's amplicon pipeline v5.0. Including the Quality control for single-end and paired-end reads, rRNA-prediction, and ITS sub-WFs.

Type: Galaxy

Creators: Rand Zoabi, Paul Zierep, EMBL's European Bioinformatics Institute

Submitter: WorkflowHub Bot

Classification and visualization of ITS regions.

Type: Galaxy

Creators: Rand Zoabi, Paul Zierep, EMBL's European Bioinformatics Institute

Submitter: WorkflowHub Bot

Quality control subworkflow for paired-end reads.

Type: Galaxy

Creators: Rand Zoabi, Paul Zierep, EMBL's European Bioinformatics Institute

Submitter: WorkflowHub Bot

Quality control subworkflow for single-end reads.

Type: Galaxy

Creators: Rand Zoabi, Paul Zierep, MGnify - EMBL

Submitter: WorkflowHub Bot

Classification and visualization of SSU, LSU sequences.

Type: Galaxy

Creators: Rand Zoabi, Paul Zierep, EMBL's European Bioinformatics Institute

Submitter: WorkflowHub Bot

This workflow creates taxonomic summary tables out of the amplicon pipeline results.

Type: Galaxy

Creator: Rand Zoabi

Submitter: WorkflowHub Bot

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite ...

Type: Nextflow

Creators: None

Submitter: WorkflowHub Bot

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite ...

Type: Nextflow

Creator: Avani Bhojwani and Timothy Little

Submitter: WorkflowHub Bot

This workflow uses eggNOG mapper and InterProScan for functional annotation of protein sequences.

Type: Galaxy

Creators: Romane Libouban, Anthony Bretaudeau

Submitter: WorkflowHub Bot

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