Research Object Crate for nanopore workflow with direct FASTQ reads inputs (without Guppy)

This is the nested workflow of the "parent" nanopore workflow without the guppy basecalling step Workflow for sequencing with ONT nanopore, from basecalling to assembly quality. Steps: - Kraken2 (taxonomic classification of FASTQ reads) - Krona (classification visualization) - Flye (de novo assembly) - Medaka (assembly polishing) - QUAST (assembly quality reports)

Author

Bart Nijsse, Jasper Koehorst, Germán Royval

License

Apache-2.0

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