Workflows

What is a Workflow?
814 Workflows visible to you, out of a total of 888
Stable

cfDNA UniFlow is a unified, standardized, and ready-to-use workflow for processing whole genome sequencing (WGS) cfDNA samples from liquid biopsies. It includes essential steps for pre-processing raw cfDNA samples, quality control and reporting. Additionally, several optional utility functions like GC bias correction and estimation of copy number state are included. Finally, we provide specialized methods for extracting coverage derived signals and visualizations comparing cases and controls. ...

This workflow is used for GO and KEGG enrichment analysis using GOseq tools.

Type: Galaxy

Creator: Amirhossein Naghsh Nilchi

Submitter: WorkflowHub Bot

Stable

This repository contains the analytical pipeline for the MAXOMOD project, which focuses on the multi-omic analysis of axono-synaptic degeneration in the motor neuron disease amyotrophic lateral sclerosis (ALS). The project explores sex differences and molecular subclusters in ALS and investigates the MAPK pathway as a potential therapeutic target.

For a detailed understanding of the scientific background and the findings, refer to our paper published on [Nature ...

Work-in-progress

This is an aggregation of the work done in Seq4AMR consisting of the following workflows:

Installation

  • You will need to:
  • run the [RGI Database ...
Stable

The Polygenic Score Catalog Calculator (pgsc_calc)

Documentation Status pgscatalog/pgsc_calc CI DOI ...

Type: Nextflow

Creators: Samuel Lambert, Benjamin Wingfield, Laurent Gil

Submitter: Samuel Lambert

Workflow for variant analysis against a reference genome in GenBank format

Type: Galaxy

Creator: Anton Nekrutenko

Submitter: WorkflowHub Bot

Stable

Metagenome-Atlas

Anaconda-Server Badge Bioconda Documentation Status ![Mastodon ...

Type: Python

Creators: None

Submitter: Silas Kieser

Subset data on the Mediterreanean see and extract and visualise the Phosphate variable

Type: Galaxy

Creator: Marie Jossé

Submitter: Marie Jossé

Workflow permettant de prendre en entrée les résultats du challenge IA-biodiv par tâche, le fichier de référence par tâche afin de faire tourner un jupyter notebook produisant les scores pour chaque consortium participant.

Type: Galaxy

Creators: Yvan Le Bras, Daniel Caon (LNE)

Submitter: Yvan Le Bras

DOI: 10.48546/workflowhub.workflow.1181.1

beacon-omop-worker-survival-analysis

Type: Common Workflow Language

Creators: None

Submitter: Vasiliki Panagi

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