qiime2-I-import/Ia-import-multiplexed-se
v0.3 (latest)

v0.3 (latest)

v0.1

v0.2 (earliest)

Workflow Type: Galaxy

Importing single-end multiplexed data (not demultiplexed yet)

SEEK ID: https://workflowhub.eu/workflows/893?version=3

Inputs

ID	Name	Description	Type
Barcodes	#main/Barcodes	Barcode sequences	File
Metadata	#main/Metadata	A tab separated metadata file	File
Metadata parameter	#main/Metadata parameter	Column name of the metadata to be used for demultiplexing	string
Reverse complement barcodes	#main/Reverse complement barcodes	If reverse complement of barcodes is necessary for the analysis, choose Yes.	boolean
Sequences	#main/Sequences	Single-end sequences	File

ID	Name	Description
5	Input files	qiime2 tools input This step allows the input of the files to be analysed and then generate a qza output, necessary for the QIIME2 pipeline. toolshed.g2.bx.psu.edu/repos/q2d2/qiime2_core__tools__import/qiime2_core__tools__import/2024.10.0+dist.h3d8a7e27
6	Metadata as artifact	Import the metadata as artifact toolshed.g2.bx.psu.edu/repos/q2d2/qiime2_core__tools__import/qiime2_core__tools__import/2024.10.0+dist.h3d8a7e27
7	Demultiplex single-end data	qiime2 demux emp-single Demultiplex sequence data generated with the EMP protocol. toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__demux__emp_single/qiime2__demux__emp_single/2024.10.0+q2galaxy.2024.10.0
8	Summarize demultiplexed output	qiime2 demux summarize Summarize counts per sample. (Galaxy Version 2023.5.0+q2galaxy.2023.5.0.2) toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__demux__summarize/qiime2__demux__summarize/2024.10.0+q2galaxy.2024.10.0

ID	Name	Description	Type
Demultiplexed single-end data	#main/Demultiplexed single-end data	n/a	File
Summary of the demultiplexing	#main/Summary of the demultiplexing	n/a	File

Updated to v0.3

Frozen v0.3 036407d

Updated to v0.1

Frozen v0.1 9dc83f3

Updated to v0.2

Frozen v0.2 792997b

Creators and Submitter

Helmholtz-Zentrum für Umweltforschung - UFZ

License

Activity

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Created: 30th May 2024 at 11:35